PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72738.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WOX
Protein Properties Length: 228aa    MW: 25245.2 Da    PI: 5.3173
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72738.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.19.4e-16363257
                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l    ++ +++V++WFqNrR + ++
  EPS72738.1  3 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 63
                89*****************99*************************************997 PP

2Wus_type_Homeobox107.76.9e-35265265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
         EPS72738.1  2 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 65
                       589***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.353164IPR001356Homeobox domain
SMARTSM003892.1E-6168IPR001356Homeobox domain
PfamPF000461.9E-13363IPR001356Homeobox domain
SuperFamilySSF466899.84E-14371IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-8369IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
PVRSRWTPKP EQILILESIF NSGMVNPPKD ETVRIRKLLE KFGSVGDANV FYWFQNRRSR  60
SRRRQRQLQA AVLAGGGGAA PAVSGTPEFV ASDCYYPVSC WASSSGLDGI NNNANHINNN  120
NNNNNNNNNN NLSELFHFPA MATDLDENPK FFFEDSSALQ TRRPEVITVF INGVAMEIAG  180
GPMEMKATFG GDFLLVHCSG TVVPVDEYGF LAEGLRDGEN YFLVNSIF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069976.19e-65PREDICTED: WUSCHEL-related homeobox 11-like
SwissprotQ8GY252e-52WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBLS8EA161e-169S8EA16_9LAMI; Uncharacterized protein (Fragment)
STRINGPOPTR_0013s06310.19e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61662231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.23e-33WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]